|
Publications
|
JOURNAL ARTICLES
- R Yang, BJ Daigle Jr, SY Muhim, R Hammamieh, M Jett, LR Petzold, FJ Doyle III, Core Modular Blood and Brain Biomarkers in Social Defeat Mouse Model for Post Traumatic Stress Disorder, BMC Systems Biology, Minor revision, 2013.
- R Hammamieh, SY Muhim, R Yang, M Jett, Systems biology of post-traumatic stress disorder: characterization of pathways and networks involved in the development of PTSD, European Journal of Psychotraumatology, 3(1), 2012.
- X Liu, Y Shen, R Yang, S Zou, X Ji, L Shi, Y Zhang, R Li, Y Tang, D Liu, L Xiao, S Li, X Zheng, S Li, J Fan, G. D. Stucky, Inkjet printing assisted synthesis of multicomponent mesoporous metal oxides for ultrafast catalyst exploration, Nano Letter, 12(11), 2012.
- R Yang, BJ Daigle Jr, LR Petzold, FJ Doyle III, Core Module BiomarkerIdentification with Network Exploration for Breast
Cancer Metastasis, BMC Bioinformatics, 13 (12), 2012. source code; dataset 1; dataset 2; dataset 3; Annotation
- R Yang, SC Lenaghan, and M Zhang, External Control of the GAL Network in S.
cerevisiae: A View from Control Theory, PLoS One, 6(4): e19353, 2011.
- R Yang, S Bewick, M Zhang, and WR Hamel, Adaptive Immune System TH1/TH2 Differentiation Mechanism Inspired
Perimeter Patrol Control Strategy, IEEE Trans Contr Syst Tech, 19 (2):407-415, 2011.
- S Bewick, J Wu, SC Lenaghan, R Yang, M Zhang, and W.R. Hamel, The R5 to X4 Coreceptor Switch: A Dead-end
Path or a Strategic Maneuver? Lessons from a Game Theoretic Analysis, Bull
Math Biol, 73(10): 2339-2356, 2011.
- R Yang, SC Lenaghan, L Xia, and M Zhang, A Mathematical Model on the Closing and Opening Mechanism for Venus
Flytrap, Plant Signal Behav, 5(8):
968-978, 2010.
- R Yang, M Zhang, and TJ Tarn,
Data-driven Feedforward Control of Electroporation Mediated Gene Delivery in
Gene Therapy, IEEE Trans Contr Syst Tech, 18(4): 935-943, 2010.
- X Zhao, R Yang, M Zhang, and H Xia, A
Computational Approach for Understanding Immune Response to Multiple Epitopes
based on Optimal Control Formulation, Commun Nonlinear Sci Numer Simul, 15(12): 4209-4218, 2010.
- X Zhao, M Zhang, and R Yang, Control
of Pore Radius Regulation for Electroporation-based Drug Delivery, Commun
Nonlinear Sci Numer Simul, 15(5):
1400-1407, 2010.
- S Bewick, R Yang, and M Zhang, The
Danger is Growing! A New Paradigm for
Immune System Activation and Peripheral Tolerance, PLoS One, 4(12): e8112, 2009.
- S Bewick, R Yang and M Zhang, Complex Mathematical Models of Biology at the Nanoscale, WIREs
Nanomed Nanobiotechno, 1(6): 650-659,
2009.
- 11.
R Yang, Y Hong, H Qin, and G Chen, Anticontrol
of chaos for dynamic systems in p-normal form: A homogeneity-based approach,
Chaos Soliton Fract, 25(3), 687-697,
2005.
SUBMITTED/IN PREPARATION
JOURNAL ARTICLES
- R Yang, BJ Daigle Jr, LR Petzold, FJ Doyle III, Pathflower: A Tool of Functional Analysis and Visualization for Genetic
Data, To be submitted to Bioinformatics.
- R Yang, K Sriram, and FJ Doyle III, Control
Model for Fear Conditioning Associated with Post-Traumatic Stress Disorder
(PTSD), In preparation.
BOOK CHAPTERS
- R Yang, SC Lenaghan, and M
Zhang, Mathematical Modeling, Dynamics
Analysis and Control of Carnivorous Plants, book chapter in Plant Electrophysiology, Springer, Under review, 2011.
- R Yang, M Zhang, and TJ Tarn, Control
Mechanisms for Life Science Automation, book chapter in Life Science
Automation: Fundamentals and Applications, Artech House Publishers, 2007.
REFEREED PROCEEDINGS
- R Yang, K Sriram, and FJ Doyle III, Control
Circuitry for Fear Conditioning Associated with Post-Traumatic Stress Disorder
(PTSD), Proceedings of the IEEE Conference
on Decision and Control, Atlanta, GA, 2010.
- J Wu, S Bewick, R Yang, SC Lenaghan, and M Zhang, Evolutionary Game
Theoretical Approach for Understanding CCR5 to CXCR4 Coreceptor Switch, Proceedings of the American Control
Conference, Baltimore,
MD, 2010.
- R Yang, SC Lenaghan, L Xia, and M Zhang, Sensing and Closing Mechanism for Venus Flytrap: Theoretical and
Experimental Studies, Proceedings of the IEEE Nanotechnology Materials and
Devices Conference, Traverse City, MI, 2009.
- S Bewick, R Yang, and M Zhang, Embedding
Evolutionary Game Theory into an Optimal Control Framework for Drug Dosage
Design, Proceedings of the 31st Annual International Conference of
the IEEE Engineering in Medicine and Biology Society, Minneapolis, MN, 2009.
- R Yang, S Bewick, M Zhang, WR Hamel, and TJ Tarn, Adaptive Immune System Inspired Perimeter Patrol Control Strategy, Proceedings
of the IEEE/RSJ International Conference
on Intelligent Robots and Systems, St. Louis, MO, 2009.
- S Bewick, R Yang, M Zhang, and WR Hamel, Passive vs. aggressive strategies: A game theoretic analysis of
military defense, Proceedings of the 2009 IEEE/RSJ International Conference
on Intelligent Robots and Systems, St. Louis, MO, 2009.
- R Yang, S Bewick, M Zhang, Optimal
Control in Immunodominance, Proceedings of the first Annual ORNL Biomedical
Science and Engineering Conference, Knoxville, TN, 2009.
- R Yang, TJ Tarn, and M Zhang, Data-driven
Feedforward Design for Electroporation Mediated Gene Delivery, Proceedings
of the IEEE Conference on Nanotechnology, Genoa, Italy, 2009.
- R Yang, TJ Tarn, and M Zhang, Event-based Two Degree-of-freedom Control for
Micro-/Nanoscale Systems based on Differential Flatness, Proceedings of the IEEE International Conference on Robotics & Automation,
Pasadena, CA, 2008.
- R Yang, TJ Tarn, and M Zhang, Event-based Feedforward Control of a Drug
Delivery System for Diabetes Cares, Proceedings of the International Federation
of Automatic Control, Seoul,
Korea, 2008.
- T Hogg, M Zhang, and R Yang,
Modeling and Analysis of DNA
Hybridization Dynamics at Microarray Surface in Moving Fluid, Proceedings of the IEEE International Conference on Robotics & Automation,
Pasadena, CA, 2008.
- R Yang, M Zhang, and TJ Tarn, Adaptive
Backstepping Control of a Micro-needle Integrated Piezoelectric Micro-pump for
Diabetes Care, Proceedings of the IEEE Conference on Nanotechnology, Hong Kong, 2007.
- R Yang, M Zhang, and TJ Tarn, Dynamics
Modeling and Control of a Micro-needle Integrated Piezoelectric Micro-pump for
Diabetes Care, Proceedings of the IEEE Conference on Nanotechnology, Cincinnati, OH, 2006.
CONFERENCES (Presenter underlined)
- R Yang,
BJ Daigle Jr, LR Petzold, FJ Doyle III, Identification
for Robust Pathway Biomarkers, Q-bio Conference, Santa Fe, New Mexico,
2011. Poster.
- R Yang,
BJ Daigle Jr, LR Petzold, FJ Doyle III, Pathway-based
Biomarker Identification for Post-Traumatic Stress Disorder (PTSD), UC
Bioengineering symposium, Santa Barbara, CA, 2011. Poster.
- R Yang,
BJ Daigle Jr, LR Petzold, FJ Doyle III, Biomarker
Discovery for Post-Traumatic Stress Disorder (PTSD), Engineering Insights,
UCSB, CA, 2011. Poster.
- R Yang, M Zhang, and TJ Tarn, Data-driven two degree-of-freedom control for a micropump and microneedle
integrated device for diabetes care, The Sixteenth
International Symposium on Artificial Life and Robotics, Beppu, Japan 2011. Plenary Talk.
- R Yang,
BJ Daigle Jr, LR Petzold, FJ Doyle III, Biomarker
Identification for Post-Traumatic Stress Disorder (PTSD), SoCal SysBio
Conference, Irvine, CA, 2010. Poster.
|
